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Hi, Thank you for replying.
The problem is that our reference coordinate system is located in the third quadrant (compared to other systems) which normally contains negative values, so I edited all reference values to negative form and it works.
Thank you

Dear CloudCompare community! I'm currently working on my Master's thesis with TLS-data and I need some advice. We have point cloud from the handheld scanner (research area in the forest) and measured positions of reference targets/objects. We need transform point cloud to reference coordinate system...